PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 917307
Common NameARALYDRAFT_917307
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 133aa    MW: 14478.8 Da    PI: 6.8121
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
917307genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.32.9e-211464255
     AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
            +y+GVr+++ +g+++AeIrd ++ g   r++lg+f+taeeAa+a+++a+ +++g
  917307 14 KYRGVRRRP-WGKYAAEIRDSRKHG--ERVWLGTFDTAEEAARAYDQAAYSMRG 64
            8********.**********65443..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.24E-271473No hitNo description
SuperFamilySSF541714.84E-241474IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.1E-331474IPR001471AP2/ERF domain
PROSITE profilePS5103224.1051472IPR001471AP2/ERF domain
PfamPF008479.3E-161464IPR001471AP2/ERF domain
SMARTSM003806.4E-371478IPR001471AP2/ERF domain
PRINTSPR003674.7E-121526IPR001471AP2/ERF domain
PRINTSPR003674.7E-123854IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009789Biological Processpositive regulation of abscisic acid-activated signaling pathway
GO:0010186Biological Processpositive regulation of cellular defense response
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0090332Biological Processstomatal closure
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MDQGGRGGGA EHGKYRGVRR RPWGKYAAEI RDSRKHGERV WLGTFDTAEE AARAYDQAAY  60
SMRGQSAILN FPHEYNMGST GGSSSTAMAG SSSSSASASS SSREVFEFEY LDDSVLEELL  120
EEEEKPKKGK KK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A1e-271578669ATERF1
2gcc_A1e-271578669ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00029PBMTransfer from AT5G43410Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0256381e-153AB025638.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MWF20.
GenBankAY5608641e-153AY560864.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g43410) mRNA, complete cds.
GenBankCP0026881e-153CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankDQ4470341e-153DQ447034.1 Arabidopsis thaliana clone pENTR221-At5g43410 ethylene-responsive factor (At5g43410) mRNA, complete cds.
GenBankDQ6533441e-153DQ653344.1 Arabidopsis thaliana clone 0000013355_0000009642 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002863652.16e-92hypothetical protein ARALYDRAFT_917307
SwissprotQ9LSX05e-65ERF96_ARATH; Ethylene-responsive transcription factor ERF096
TrEMBLD7MP657e-92D7MP65_ARALL; Putative uncharacterized protein
STRINGscaffold_800707.12e-91(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43410.11e-43ERF family protein